Index
_
|
A
|
C
|
D
|
F
|
G
|
I
|
J
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
_
__init__() (sourmash.MinHash method)
A
add() (sourmash.MinHash method)
add_hash() (sourmash.MinHash method)
add_hash_with_abundance() (sourmash.MinHash method)
add_many() (sourmash.MinHash method)
add_node() (sourmash.sbt.SBT method)
add_protein() (sourmash.MinHash method)
add_sequence() (sourmash.MinHash method)
angular_similarity() (sourmash.MinHash method)
C
child() (sourmash.sbt.SBT method)
children() (sourmash.sbt.SBT method)
clear() (sourmash.MinHash method)
combine() (sourmash.sbt.SBT method)
compare() (sourmash.MinHash method)
contained_by() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
containment_ignore_maxhash() (sourmash.MinHash method)
copy_and_clear() (sourmash.MinHash method)
count_common() (sourmash.MinHash method)
D
data() (sourmash.sbt.Leaf property)
(sourmash.sbt.Node property)
downsample_max_hash() (sourmash.MinHash method)
downsample_n() (sourmash.MinHash method)
downsample_scaled() (sourmash.MinHash method)
F
find() (sourmash.sbt.SBT method)
G
gather() (sourmash.sbt.SBT method)
get_hashes() (sourmash.MinHash method)
get_mins() (sourmash.MinHash method)
GraphFactory (class in sourmash.sbt)
I
init_args() (sourmash.sbt.GraphFactory method)
insert() (sourmash.sbt.SBT method)
intersection() (sourmash.MinHash method)
is_molecule_type() (sourmash.MinHash method)
J
jaccard() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
L
Leaf (class in sourmash.sbt)
leaves() (sourmash.sbt.SBT method)
load() (sourmash.sbt.Leaf class method)
(sourmash.sbt.Node static method)
(sourmash.sbt.SBT class method)
load_matrix_and_labels() (in module sourmash.fig)
load_signatures() (in module sourmash.signature)
M
md5sum() (sourmash.signature.SourmashSignature method)
MinHash (class in sourmash)
module
sourmash.fig
sourmash.sbt
sourmash.signature
N
name() (sourmash.signature.SourmashSignature method)
new_node_pos() (sourmash.sbt.SBT method)
Node (class in sourmash.sbt)
node() (sourmash.sbt.NodePos property)
NodePos (class in sourmash.sbt)
P
parent() (sourmash.sbt.SBT method)
plot_composite_matrix() (in module sourmash.fig)
pos() (sourmash.sbt.NodePos property)
print() (sourmash.sbt.SBT method)
print_dot() (sourmash.sbt.SBT method)
R
remove_many() (sourmash.MinHash method)
S
save() (sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
(sourmash.sbt.SBT method)
save_signatures() (in module sourmash.signature)
SBT (class in sourmash.sbt)
search() (sourmash.sbt.SBT method)
select() (sourmash.sbt.SBT method)
set_abundances() (sourmash.MinHash method)
SigInput (class in sourmash.signature)
signatures() (sourmash.sbt.SBT method)
similarity() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
sourmash.fig
module
sourmash.sbt
module
sourmash.signature
module
SourmashSignature (class in sourmash.signature)
subtract_mins() (sourmash.MinHash method)
T
translate_codon() (sourmash.MinHash method)
U
unload() (sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
update() (sourmash.MinHash method)
(sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
Table Of Contents
Welcome to Sourmash!
Using sourmash from the command line
sourmash tutorials and notebooks
Using sourmash: a practical guide
Classifying signatures:
search
,
gather
, and
lca
methods.
Prepared search databases
sourmash
Python API
Additional information on sourmash
Support
Developer information
Related Topics
Documentation overview
Quick search