sourmash Python API¶

The primary programmatic way of interacting with sourmash is via its Python API. Please also see examples of using the API.

Contents

  • sourmash Python API

    • MinHash: basic MinHash sketch functionality

    • SourmashSignature: save and load MinHash sketches in JSON

    • SBT: save and load Sequence Bloom Trees in JSON

    • sourmash.fig: make plots and figures

MinHash: basic MinHash sketch functionality¶

SourmashSignature: save and load MinHash sketches in JSON¶

SBT: save and load Sequence Bloom Trees in JSON¶

sourmash.fig: make plots and figures¶

Table Of Contents

Welcome to Sourmash!
  • Using sourmash from the command line
  • sourmash tutorials and notebooks
  • Using sourmash: a practical guide
  • Classifying signatures: search, gather, and lca methods.
  • sourmash Python API
  • Additional information on sourmash
  • Support

Related Topics

  • Documentation overview
    • Previous: Classifying signatures: search, gather, and lca methods.
    • Next: Additional information on sourmash

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