Index
_
|
A
|
C
|
D
|
F
|
G
|
I
|
J
|
K
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
U
_
__init__() (sourmash.MinHash method)
A
add_hash() (sourmash.MinHash method)
add_hash_with_abundance() (sourmash.MinHash method)
add_kmer() (sourmash.MinHash method)
add_many() (sourmash.MinHash method)
add_node() (sourmash.sbt.SBT method)
add_protein() (sourmash.MinHash method)
add_sequence() (sourmash.MinHash method)
angular_similarity() (sourmash.MinHash method)
avg_containment() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
avg_containment_ani() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
C
child() (sourmash.sbt.SBT method)
children() (sourmash.sbt.SBT method)
clear() (sourmash.MinHash method)
combine() (sourmash.sbt.SBT method)
contained_by() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
containment_ani() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
copy() (sourmash.MinHash method)
copy_and_clear() (sourmash.MinHash method)
count_common() (sourmash.MinHash method)
D
data (sourmash.sbt.Leaf property)
(sourmash.sbt.Node property)
downsample() (sourmash.MinHash method)
F
find() (sourmash.sbt.SBT method)
flatten() (sourmash.MinHash method)
FrozenSourmashSignature (class in sourmash.signature)
G
get_hashes() (sourmash.MinHash method)
get_mins() (sourmash.MinHash method)
GraphFactory (class in sourmash.sbt)
I
inflate() (sourmash.MinHash method)
init_args() (sourmash.sbt.GraphFactory method)
insert() (sourmash.sbt.SBT method)
intersection_and_union_size() (sourmash.MinHash method)
into_frozen() (sourmash.MinHash method)
(sourmash.signature.FrozenSourmashSignature method)
(sourmash.signature.SourmashSignature method)
is_database (sourmash.sbt.SBT attribute)
J
jaccard() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
jaccard_ani() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
K
kmers_and_hashes() (sourmash.MinHash method)
L
Leaf (class in sourmash.sbt)
leaves() (sourmash.sbt.SBT method)
load() (sourmash.sbt.Leaf class method)
(sourmash.sbt.Node static method)
(sourmash.sbt.SBT class method)
load_matrix_and_labels() (in module sourmash.fig)
load_signatures() (in module sourmash.signature)
location (sourmash.sbt.SBT property)
M
make_manifest_row() (sourmash.sbt.Leaf method)
max_containment() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
max_containment_ani() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
max_hash (sourmash.MinHash property)
md5sum() (sourmash.signature.SourmashSignature method)
MinHash (class in sourmash)
module
sourmash.fig
sourmash.sbt
sourmash.signature
N
new_node_pos() (sourmash.sbt.SBT method)
Node (class in sourmash.sbt)
node (sourmash.sbt.NodePos attribute)
NodePos (class in sourmash.sbt)
P
parent() (sourmash.sbt.SBT method)
plot_composite_matrix() (in module sourmash.fig)
pos (sourmash.sbt.NodePos attribute)
print() (sourmash.sbt.SBT method)
print_dot() (sourmash.sbt.SBT method)
R
remove_many() (sourmash.MinHash method)
S
save() (sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
(sourmash.sbt.SBT method)
save_signatures() (in module sourmash.signature)
SBT (class in sourmash.sbt)
select() (sourmash.sbt.SBT method)
seq_to_hashes() (sourmash.MinHash method)
set_abundances() (sourmash.MinHash method)
SigInput (class in sourmash.signature)
signatures() (sourmash.sbt.SBT method)
similarity() (sourmash.MinHash method)
(sourmash.signature.SourmashSignature method)
size_is_accurate() (sourmash.MinHash method)
sourmash.fig
module
sourmash.sbt
module
sourmash.signature
module
SourmashSignature (class in sourmash.signature)
T
to_frozen() (sourmash.MinHash method)
(sourmash.signature.FrozenSourmashSignature method)
(sourmash.signature.SourmashSignature method)
to_mutable() (sourmash.MinHash method)
(sourmash.signature.FrozenSourmashSignature method)
(sourmash.signature.SourmashSignature method)
U
unique_dataset_hashes (sourmash.MinHash property)
unload() (sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
update() (sourmash.sbt.Leaf method)
(sourmash.sbt.Node method)
(sourmash.signature.FrozenSourmashSignature method)
sourmash
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