Index

_

__init__() (sourmash.MinHash method)

A

add_hash() (sourmash.MinHash method) add_hash_with_abundance() (sourmash.MinHash method) add_kmer() (sourmash.MinHash method) add_many() (sourmash.MinHash method) add_node() (sourmash.sbt.SBT method) add_protein() (sourmash.MinHash method)

add_sequence() (sourmash.MinHash method) angular_similarity() (sourmash.MinHash method) avg_containment() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method) avg_containment_ani() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method)

C

child() (sourmash.sbt.SBT method) children() (sourmash.sbt.SBT method) clear() (sourmash.MinHash method) combine() (sourmash.sbt.SBT method) contained_by() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method)

containment_ani() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method) copy() (sourmash.MinHash method) copy_and_clear() (sourmash.MinHash method) count_common() (sourmash.MinHash method)

D

data (sourmash.sbt.Leaf property) (sourmash.sbt.Node property)

downsample() (sourmash.MinHash method)

F

find() (sourmash.sbt.SBT method)

flatten() (sourmash.MinHash method) FrozenSourmashSignature (class in sourmash.signature)

G

get_hashes() (sourmash.MinHash method)

get_mins() (sourmash.MinHash method) GraphFactory (class in sourmash.sbt)

I

inflate() (sourmash.MinHash method) init_args() (sourmash.sbt.GraphFactory method) insert() (sourmash.sbt.SBT method) intersection_and_union_size() (sourmash.MinHash method)

into_frozen() (sourmash.MinHash method) (sourmash.signature.FrozenSourmashSignature method) (sourmash.signature.SourmashSignature method) is_database (sourmash.sbt.SBT attribute)

J

jaccard() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method)

jaccard_ani() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method)

K

kmers_and_hashes() (sourmash.MinHash method)

L

Leaf (class in sourmash.sbt) leaves() (sourmash.sbt.SBT method) load() (sourmash.sbt.Leaf class method) (sourmash.sbt.Node static method) (sourmash.sbt.SBT class method)

load_matrix_and_labels() (in module sourmash.fig) load_signatures() (in module sourmash.signature) location (sourmash.sbt.SBT property)

M

make_manifest_row() (sourmash.sbt.Leaf method) max_containment() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method) max_containment_ani() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method) max_hash (sourmash.MinHash property)

md5sum() (sourmash.signature.SourmashSignature method) MinHash (class in sourmash) module sourmash.fig sourmash.sbt sourmash.signature

N

new_node_pos() (sourmash.sbt.SBT method) Node (class in sourmash.sbt)

node (sourmash.sbt.NodePos attribute) NodePos (class in sourmash.sbt)

P

parent() (sourmash.sbt.SBT method) plot_composite_matrix() (in module sourmash.fig)

pos (sourmash.sbt.NodePos attribute) print() (sourmash.sbt.SBT method) print_dot() (sourmash.sbt.SBT method)

R

remove_many() (sourmash.MinHash method)

S

save() (sourmash.sbt.Leaf method) (sourmash.sbt.Node method) (sourmash.sbt.SBT method) save_signatures() (in module sourmash.signature) SBT (class in sourmash.sbt) select() (sourmash.sbt.SBT method) seq_to_hashes() (sourmash.MinHash method) set_abundances() (sourmash.MinHash method) SigInput (class in sourmash.signature) signatures() (sourmash.sbt.SBT method)

similarity() (sourmash.MinHash method) (sourmash.signature.SourmashSignature method) size_is_accurate() (sourmash.MinHash method) sourmash.fig module sourmash.sbt module sourmash.signature module SourmashSignature (class in sourmash.signature)

T

to_frozen() (sourmash.MinHash method) (sourmash.signature.FrozenSourmashSignature method) (sourmash.signature.SourmashSignature method)

to_mutable() (sourmash.MinHash method) (sourmash.signature.FrozenSourmashSignature method) (sourmash.signature.SourmashSignature method)

U

unique_dataset_hashes (sourmash.MinHash property) unload() (sourmash.sbt.Leaf method) (sourmash.sbt.Node method)

update() (sourmash.sbt.Leaf method) (sourmash.sbt.Node method) (sourmash.signature.FrozenSourmashSignature method)