sourmash Python API¶

The primary programmatic way of interacting with sourmash is via its Python API. (The core MinHash Python API closely mirrors the underlying C++ code, but for now this is undocumented.)

Contents

  • sourmash Python API
    • MinHash: basic MinHash sketch functionality
    • SourmashSignature: save and load MinHash sketches in JSON
    • sourmash_lib.fig: make plots and figures

MinHash: basic MinHash sketch functionality¶

SourmashSignature: save and load MinHash sketches in JSON¶

sourmash_lib.fig: make plots and figures¶

Table Of Contents

  • Using sourmash from the command line
  • A sourmash tutorial
  • Prepared search databases
  • sourmash Python API
  • sourmash Python examples
  • Computational requirements
  • Additional information on sourmash
  • Support

Related Topics

  • Documentation overview
    • Previous: Prepared search databases
    • Next: sourmash Python examples

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